DOI: 10.18129/B9.bioc.CellNOptR    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see CellNOptR.

Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data

Bioconductor version: 3.11

This package does optimisation of boolean logic networks of signalling pathways based on a previous knowledge network and a set of data upon perturbation of the nodes in the network.

Author: T.Cokelaer, F.Eduati, A.MacNamara, S.Schrier, C.Terfve, E.Gjerga, A.Gabor

Maintainer: A.Gabor <attila.gabor at uni-heidelberg.de>

Citation (from within R, enter citation("CellNOptR")):


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PDF R Script Main vignette:Playing with networks using CellNOptR
PDF   Reference Manual
Text   NEWS


biocViews CellBasedAssays, CellBiology, ImmunoOncology, Network, Pathways, Proteomics, Software, TimeCourse
Version 1.34.0
In Bioconductor since BioC 2.9 (R-2.14) (9 years)
License GPL-3
Depends R (>= 3.5.0), RBGL, graph, methods, hash, RCurl, Rgraphviz, XML, ggplot2
Imports igraph, stringi, stringr
Suggests data.table, dplyr, tidyr, readr, RUnit, BiocGenerics
SystemRequirements Graphviz version >= 2.2
Enhances doParallel
Depends On Me CNORdt, CNORfeeder, CNORfuzzy, CNORode
Imports Me
Suggests Me MEIGOR
Links To Me
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Source Package CellNOptR_1.34.0.tar.gz
Windows Binary CellNOptR_1.34.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra) CellNOptR_1.34.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CellNOptR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CellNOptR
Package Short Url https://bioconductor.org/packages/CellNOptR/
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