CONFESS

DOI: 10.18129/B9.bioc.CONFESS    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see CONFESS.

Cell OrderiNg by FluorEScence Signal

Bioconductor version: 3.11

Single Cell Fluidigm Spot Detector.

Author: Diana LOW and Efthimios MOTAKIS

Maintainer: Diana LOW <lowdiana at gmail.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CONFESS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CONFESS")

 

PDF	R Script	CONFESS
HTML	R Script	CONFESS Walkthrough
PDF		Reference Manual
Text		NEWS

Details

biocViews	CellBiology, Classification, Clustering, DataImport, GeneExpression, ImmunoOncology, QualityControl, RNASeq, Regression, Software, TimeCourse, Visualization
Version	1.16.0
In Bioconductor since	BioC 3.3 (R-3.3) (4.5 years)
License	GPL-2
Depends	R (>= 3.3), grDevices, utils, stats, graphics
Imports	methods, changepoint, cluster, contrast, data.table (>= 1.9.7), ecp, EBImage, flexmix, flowCore, flowClust, flowMeans, flowMerge, flowPeaks, foreach, ggplot2, grid, limma, MASS, moments, outliers, parallel, plotrix, raster, readbitmap, reshape2, SamSPECTRAL, waveslim, wavethresh, zoo
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, CONFESSdata
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CONFESS_1.16.0.tar.gz
Windows Binary	CONFESS_1.16.0.zip
macOS 10.13 (High Sierra)	CONFESS_1.16.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/CONFESS
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CONFESS
Package Short Url	https://bioconductor.org/packages/CONFESS/
Package Downloads Report	Download Stats