BRAIN

DOI: 10.18129/B9.bioc.BRAIN    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see BRAIN.

Baffling Recursive Algorithm for Isotope distributioN calculations

Bioconductor version: 3.11

Package for calculating aggregated isotopic distribution and exact center-masses for chemical substances (in this version composed of C, H, N, O and S). This is an implementation of the BRAIN algorithm described in the paper by J. Claesen, P. Dittwald, T. Burzykowski and D. Valkenborg.

Author: Piotr Dittwald, with contributions of Dirk Valkenborg and Jurgen Claesen

Maintainer: Piotr Dittwald <piotr.dittwald at mimuw.edu.pl>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BRAIN")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BRAIN")

 

PDF	R Script	BRAIN Usage
PDF		Reference Manual

Details

biocViews	ImmunoOncology, MassSpectrometry, Proteomics, Software
Version	1.34.0
In Bioconductor since	BioC 2.10 (R-2.15) (8.5 years)
License	GPL-2
Depends	R (>= 2.8.1), PolynomF, Biostrings, lattice
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	cleaver, RforProteomics, synapter
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BRAIN_1.34.0.tar.gz
Windows Binary	BRAIN_1.34.0.zip
macOS 10.13 (High Sierra)	BRAIN_1.34.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/BRAIN
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/BRAIN
Package Short Url	https://bioconductor.org/packages/BRAIN/
Package Downloads Report	Download Stats