ASpediaFI

DOI: 10.18129/B9.bioc.ASpediaFI    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see ASpediaFI.

ASpedia-FI: Functional Interaction Analysis of Alternative Splicing Events

Bioconductor version: 3.11

This package provides functionalities for a systematic and integrative analysis of alternative splicing events and their functional interactions.

Author: Doyeong Yu, Kyubin Lee, Daejin Hyung, Soo Young Cho, Charny Park

Maintainer: Doyeong Yu <parklab.bi at gmail.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ASpediaFI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ASpediaFI")

 

PDF	R Script	ASpediaFI.pdf
PDF		Reference Manual
Text		NEWS

Details

biocViews	AlternativeSplicing, Annotation, Coverage, GeneExpression, GeneSetEnrichment, GraphAndNetwork, KEGG, Network, NetworkInference, Pathways, Reactome, Sequencing, Software, Transcription, Visualization
Version	1.2.0
In Bioconductor since	BioC 3.10 (R-3.6) (1 year)
License	GPL-3
Depends	R (>= 3.6.0), SummarizedExperiment, ROCR
Imports	BiocParallel, GenomicAlignments, GenomicFeatures, GenomicRanges, IRanges, IVAS, Rsamtools, biomaRt, limma, S4Vectors, stats, DRaWR, GenomeInfoDb, Gviz, Matrix, dplyr, fgsea, reshape2, igraph, graphics, e1071, methods, rtracklayer, scales, grid, ggplot2, mGSZ, utils
LinkingTo
Suggests	knitr
SystemRequirements
Enhances
URL
BugReports	https://github.com/nachoryu/ASpediaFI
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ASpediaFI_1.2.0.tar.gz
Windows Binary	ASpediaFI_1.2.0.zip
macOS 10.13 (High Sierra)	ASpediaFI_1.2.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ASpediaFI
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ASpediaFI
Package Short Url	https://bioconductor.org/packages/ASpediaFI/
Package Downloads Report	Download Stats