getReadLength {seqsetvis}R Documentation

determine the most common read length for input bam_file. uses 50 randomly selected regions from query_gr. If fewer than 20 reads are present, loads all of query_gr.

Description

determine the most common read length for input bam_file. uses 50 randomly selected regions from query_gr. If fewer than 20 reads are present, loads all of query_gr.

Usage

getReadLength(bam_file, query_gr)

Arguments

bam_file

indexed bam file

query_gr

GRanges to read from bam file

Value

numeric of most common read length.


[Package seqsetvis version 1.8.0 Index]