Weighted matrix manipulation, finding components of variation with weighted or sparse data

Documentation for package ‘weitrix’ version 1.0.0

as_weitrix	Convert data to a weitrix
bless_weitrix	Bless a SummarizedExperiment as a weitrix
components_seq_scree	Proportion more variance explained by adding components one at a time
components_seq_screeplot	Proportion more variance explained by adding components one at a time
counts_proportions	Produce a weitrix of proportions within groups
counts_shift	Produce a weitrix of shift scores
matrix_long	Convert a matrix to long form for ggplotting
simwei	Simulated weitrix dataset.
weitrix_calibrate	Adjust weights based on given row dispersions
weitrix_calibrate_trend	Adjust weights by fitting a trend to estimated dispersions
weitrix_components	Principal components of a weitrix
weitrix_components_seq	Principal components of a weitrix
weitrix_dispersions	Calculate row dispersions
weitrix_elist	Convert a weitrix object to a limma EList object
weitrix_hill	Calculate Hill numbers (effective number of observations) for rows or columns
weitrix_randomize	Generate a random normally distributed version of a weitrix
weitrix_weights	Get or set a weitrix object's "weights" matrix
weitrix_weights<-	Get or set a weitrix object's "weights" matrix
weitrix_x	Get or set a weitrix object's "x" matrix
weitrix_x<-	Get or set a weitrix object's "x" matrix