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| evo | Run evo. |
| get_GI_network | Get gene-interaction network. |
| get_GM_network | Get gene membership network. |
| get_GS_network | Get genomic sequence network. |
| ldweight_edges | Include linkage disequilibrium information in the network. |
| minigwas | Description of the minigwas dataset. |
| minippi | PPIs for the minigwas dataset. |
| minisnpMapping | Genes for the minigwas dataset. |
| run_scones | Run shake. |
| scones | Find connected explanatory SNPs. |
| scones.cv | Find connected explanatory SNPs. |
| search_cones | Find connected explanatory SNPs. |
| simulate_causal_snps | Simulate causal SNPs |
| simulate_phenotype | Simulate phenotype |
| subvert | Vertices with an attribute |