Hyper Enrichment


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Documentation for package ‘hypeR’ version 1.4.0

Help Pages

enrichr_available Get enrichr available genesets
enrichr_download Download data from enrichr in the form of a named list
enrichr_gsets Download data from enrichr in the form of a gsets object
ggempty An empty ggplot
ggeplot Enrichment plot implemented in ggplot
ggvenn Venn diagram implemented in ggplot
gsets A genesets object
hyp A hyp object
hypeR Calculate enrichment of one or more signatures
hyperdb_info Print hypeR-db rgsets information
hyperdb_rgsets Download data from hyperdb in the form of a rgsets object
hyp_dots Visualize hyp/multihyp objects as a dots plot
hyp_emap Visualize hyp/multihyp objects as an enrichment map
hyp_hmap Visualize hyp/multihyp objects as a hiearchy map
hyp_show Convert a hyp object to a reactable table
hyp_to_excel Export hyp/multihyp object to excel
hyp_to_rmd Export hyp object to rmarkdown
hyp_to_table Export hyp/multihyp object to table
msigdb_available Get msigdbr available genesets
msigdb_download Download data from msigdb in the form of a named list
msigdb_gsets Download data from msigdb in the form of a gsets object
msigdb_info Print msigdb gsets information
msigdb_species Get msigdbr available species
msigdb_version Get msigdbr package version number
multihyp A multihyp object
pvector A push/pop capable vector
rgsets A relational genesets object