Segmentation of Bis-seq data

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Documentation for package ‘MethylSeekR’ version 1.28.0

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MethylSeekR-package Segmentation of Bis-seq methylation data
calculateFDRs Determine false discovery rate
MethylSeekR Segmentation of Bis-seq methylation data
plotAlphaDistributionOneChr Calculate and plot alpha distribution.
plotFinalSegmentation Plotting final segmentation
plotPMDSegmentation Plotting the PMD Segmentation
readMethylome Load Bis-seq data
readSNPTable Load SNP table
removeSNPs Remove CpGs overlapping SNPs
savePMDSegments Save PMD segments
saveUMRLMRSegments Save UMR and LMR segments
segmentPMDs PMD segmenter
segmentUMRsLMRs Identify UMRs and LMRs