CAMTHC-package | CAMTHC: A package for Tissue Heterogeneity Characterization. |
AfromMarkers | Proportion matrix estimation from marker genes |
Amat | Deconvoluted matrix accessors |
Amat-method | Deconvoluted matrix accessors |
AS-accessor | Deconvoluted matrix accessors |
CAM | Convex Analysis of Mixtures |
CAMASest | A and S matrix estimation by CAM |
CAMASObj | Class "CAMASObj" |
CAMASObj-class | Class "CAMASObj" |
CAMMGCluster | MG cluster detection for CAM |
CAMMGObj | Class "CAMMGObj" |
CAMMGObj-class | Class "CAMMGObj" |
CAMObj | Class "CAMObj" |
CAMObj-class | Class "CAMObj" |
CAMPrep | Data preprocessing for CAM |
CAMPrepObj | Class "CAMPrepObj" |
CAMPrepObj-class | Class "CAMPrepObj" |
CAMTHC | CAMTHC: A package for Tissue Heterogeneity Characterization. |
cornerSort | Candidate combinations as corners |
MDL | Minimum Description Length |
MDLObj | Class "MDLObj" |
MDLObj-class | Class "MDLObj" |
MGsforA | Marker genes detected by CAM for estimating A |
MGstatistic | Statistics for ranking marker genes |
PCAmat | Dimension-reduction loading matrix accessor |
PCAmat-method | Dimension-reduction loading matrix accessor |
plot-method | Minimum Description Length |
ratMix3 | Gene expression data downsampled from GSE19380 |
redoASest | Re-estimate A, S matrix |
reselectMG | Reselect markers by thresholding |
sffsHull | Sequential Forward Floating Selection (SFFS) to approximate convex hull |
simplexplot | The plot of scatter simplex |
Smat | Deconvoluted matrix accessors |
Smat-method | Deconvoluted matrix accessors |
XWProj | Perspective projection to obtain simplex |