## ------------------------------------------------------------------------ dir <- system.file("extdata", package="tximportData") samples <- read.table(file.path(dir,"samples.txt"), header=TRUE) samples ## ------------------------------------------------------------------------ samples.ext <- read.delim(file.path(dir,"samples_extended.txt"), header=TRUE) colnames(samples.ext) ## ------------------------------------------------------------------------ list.files(dir) list.files(file.path(dir,"cufflinks")) list.files(file.path(dir,"rsem","ERR188021")) list.files(file.path(dir,"kallisto","ERR188021")) list.files(file.path(dir,"salmon","ERR188021")) list.files(file.path(dir,"sailfish","ERR188021")) ## ------------------------------------------------------------------------ sessionInfo()