## ---- include = FALSE------------------------------------------------------ knitr::opts_chunk$set( collapse = TRUE, comment = "#>" ) ## ----setup, eval=FALSE----------------------------------------------------- # if(!requireNamespace("BiocManager", quietly = TRUE)) # install.packages("BiocManager") # BiocManager::install("Qtlizer") ## -------------------------------------------------------------------------- library(Qtlizer) ## -------------------------------------------------------------------------- # Call get_qtls with a variant as a single query term get_qtls("rs4284742") ## -------------------------------------------------------------------------- # Call get_qtls with multiple query terms in single string df = get_qtls("rs4284742, rs2070901") ## -------------------------------------------------------------------------- # Call get_qtls with multiple query terms as vector df = get_qtls(c("rs4284742", "DEFA1")) ## -------------------------------------------------------------------------- # Use parameters corr and ld_method df = get_qtls(c("rs4284742", "DEFA1"), corr = 0.8, ld_method = "r2") ## -------------------------------------------------------------------------- # View meta info df = get_qtls("rs4284742") comment(df) ## -------------------------------------------------------------------------- # Return result as GRange object with ref_version hg38 granges = get_qtls("rs4284742", return_obj = "granges", ref_version = "hg38") ## -------------------------------------------------------------------------- sessionInfo()