Version 1.29.0: (2018-12-08) - migrated all codes to support the BioC3.9! This is because the BioC3.9 will not anymore support the 'RangedData' which is mainly used by r3Cseq in the previous versions. version 1.13.1: (2015-01-26) - fixed the bugs in function "export3Cseq2bedGraph" - fixed the bugs in function "getViewpoint" - fixed the bugs in function "export3CseqRawReads2bedGraph" - added "mm10" and "rn5" genomes into the package version 1.9.2: (2013-11-11) - fixed the bugs in function getFragmentsPerWindow for "overlapping window" version 1.9.1: (2013-10-21) - added the yLim input parameter of plotInteractionsNearViewpoint - added the log2 cutoff ratio for the function plotInteractionsNearViewpoint - fixed the shift of interaction in the viewpoint chromosome found in the function getFragmentsPerWindow - fixed the missing input parameter for the function getBatchReadCountPerWindow - fixed the class of r3CseqInBatch version 1.5.0: (2012-10-25) - added the new normalization method of 3C-seq analysis - added the new statistical analysis for identification of 3C-seq interaction regions - added the analysis for both restriction fragment and a user defined non-overlapping window - added the analysis for 3C-seq data with replicates - added the new visualization "domainograms" - updated the existing plots - update the exported methods - added the options for counting reads per regions - fixed the bug of counting reads per regions - updated the vignette