CHANGES IN VERSION 1.6.1 -------------------------- - bug fix to cause by Shiny 1.4.0 (renderDataTable causes error in jquery). solution is to import DT package and specify DT::renderDataTable and DT::dataTableOutput. - ensured that ALDEx2 dependency for aldex.plot feature is correctly implemented - added Brandon Lieng as author CHANGES IN VERSION 1.6.0 -------------------------- - bioconductor release 3.10, no changes since 1.5.4 CHANGES IN VERSION 1.5.4 -------------------------- - explicitly calling some functions to prevent conflicts (jsonlite::fromJSON) - corrected namespace and description - removed "require(libraries") from ui. - bug fix for calculating aldex object. sometimes would need to click generate effect plot twice. - version bump - changed T to TRUE in rab_script and server.R CHANGES IN VERSION 1.5.1 -------------------------- - choice of pseudocount or CZM - changed how conditions are selected manually for effect size. now, you input the column number - added ability to download GO slim annotated feature tables directly from MGNify database by inputting a Study ID - added density plots for interactive effect sizes - currently depends on specific version of ALDEx2 (temporary) CHANGES IN VERSION 1.1.2 -------------------------- - bug fix for CZM in RAB plots. if not zeros, plots would fail. CHANGES IN VERSION 1.1.2 -------------------------- - updated install instructions to use `BiocManager` CHANGES IN VERSION 1.1.1 -------------------------- - added slider inputs to change size and opacity of sample names for biplot and coloured biplot - changed UI for filtering page - added downloadable scripts for PCA biplots, dendrogram/barplots, and effect plots (simple effect plot script). CHANGES IN VERSION 0.99.4 -------------------------- - changed vignette to html instead of pdf. - edited vignette. CHANGES IN VERSION 0.99.3 -------------------------- - bug fix. extrainformation.rmd changed to extrainformation.Rmd. CHANGES IN VERSION 0.99.0 -------------------------- - release version.