CHANGES IN VERSION 1.15.0 ---------------------- o Update for compatibility with new R versions. The confusion matrix is now an object of class 'table'. CHANGES IN VERSION 1.9.3 ---------------------- o Updated for compatibility with igraph 1.0 CHANGES IN VERSION 1.9 ---------------------- o Added CITATION o GenesRanking help: How to create a GenesRanking object based on scores provided by another algorithm o Several message and warning improvements o Bugfix: 0 IQR filter now returns the original matrix CHANGES IN VERSION 1.6.1 ---------------------- o Vignette update o Added Spearman and Kendall correlations (argument correlationMethod) CHANGES IN VERSION 1.6 ---------------------- NEW FEATURES o No longer required to have the same number of samples per class o plotExpressionProfiles can also plot boxplots o Default lpThreshold changed from 0.75 to 0.95 o 'identify' added as argument to plotAssignments and plotExpressionProfiles o plotNetwork now always returns the network list (invisible), argument 'returniGraphs' is no longer needed. BUG FIXES o Minor bugfixes when there are only two classes CHANGES IN VERSION 1.3.1 ---------------------- NEW FEATURES o plotAssignments: Optimized speed and changed background color to blue. Added argument pointSize. o plotExpressionProfiles: Added argument sampleColors. BUG FIXES o Added RUnit and BiocGenerics to "Suggests" to avoid R CHECK warnings o Import methods, ebarrays and emfit in namespace to avoid R CHECK warnings o plot.GenesNetwork is now completelly equivalent to plotNetwork (same default arguments) CHANGES IN VERSION 1.1.1 ---------------------- BUG FIXES o plotDiscriminantPower now accepts feature names starting by number (i.e. affy probes) CHANGES IN VERSION 1.0 ---------------------- NEW FEATURES o Package released