limmaGUI

DOI: 10.18129/B9.bioc.limmaGUI    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see limmaGUI.

GUI for limma Package With Two Color Microarrays

Bioconductor version: 3.10

A Graphical User Interface for differential expression analysis of two-color microarray data using the limma package.

Author: James Wettenhall [aut], Gordon Smyth [aut], Keith Satterley [ctb]

Maintainer: Gordon Smyth <smyth at wehi.edu.au>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("limmaGUI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("limmaGUI")

 

HTML		about.html
HTML		CustMenu.html
PDF		Extracting limma objects from limmaGUI files
HTML		import.html
HTML		index.html
HTML		InputFiles.html
HTML		lgDevel.html
PDF	R Script	limmaGUI Vignette
PDF		LinModIntro.pdf
HTML		windowsFocus.html
PDF		Reference Manual

Details

biocViews	BatchEffect, Bayesian, DataImport, DifferentialExpression, GUI, GeneExpression, Microarray, MultipleComparison, Normalization, Preprocessing, QualityControl, Regression, Software, TimeCourse, TwoChannel, mRNAMicroarray
Version	1.62.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 15 years)
License	GPL (>=2)
Depends
Imports	methods, grDevices, graphics, limma, R2HTML, tcltk, tkrplot, xtable, utils
LinkingTo
Suggests
SystemRequirements
Enhances
URL	http://bioinf.wehi.edu.au/limmaGUI/
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	limmaGUI_1.62.0.tar.gz
Windows Binary	limmaGUI_1.62.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	limmaGUI_1.62.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/limmaGUI
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/limmaGUI
Package Short Url	https://bioconductor.org/packages/limmaGUI/
Package Downloads Report	Download Stats