chromDraw

DOI: 10.18129/B9.bioc.chromDraw    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see chromDraw.

chromDraw is a R package for drawing the schemes of karyotypes in the linear and circular fashion.

Bioconductor version: 3.10

ChromDraw is a R package for drawing the schemes of karyotype(s) in the linear and circular fashion. It is possible to visualized cytogenetic marsk on the chromosomes. This tool has own input data format. Input data can be imported from the GenomicRanges data structure. This package can visualized the data in the BED file format. Here is requirement on to the first nine fields of the BED format. Output files format are *.eps and *.svg.

Author: Jan Janecka, Ing., Mgr. CEITEC Masaryk University

Maintainer: Jan Janecka <jan.janecka at ceitec.muni.cz>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("chromDraw")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("chromDraw")

 

PDF	R Script	chromDraw
PDF		Reference Manual
Text		NEWS

Details

biocViews	Software
Version	2.16.0
In Bioconductor since	BioC 3.1 (R-3.2) (5 years)
License	GPL-3
Depends	R (>= 3.0.0)
Imports	Rcpp (>= 0.11.1), GenomicRanges(>= 1.17.46)
LinkingTo	Rcpp
Suggests
SystemRequirements	Rtools (>= 3.1)
Enhances
URL	www.plantcytogenomics.org/chromDraw
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	chromDraw_2.16.0.tar.gz
Windows Binary	chromDraw_2.16.0.zip
Mac OS X 10.11 (El Capitan)	chromDraw_2.16.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/chromDraw
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/chromDraw
Package Short Url	https://bioconductor.org/packages/chromDraw/
Package Downloads Report	Download Stats