DOI: 10.18129/B9.bioc.TSCAN    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see TSCAN.

TSCAN: Tools for Single-Cell ANalysis

Bioconductor version: 3.10

TSCAN enables users to easily construct and tune pseudotemporal cell ordering as well as analyzing differentially expressed genes. TSCAN comes with a user-friendly GUI written in shiny. More features will come in the future.

Author: Zhicheng Ji, Hongkai Ji

Maintainer: Zhicheng Ji <zji4 at jhu.edu>

Citation (from within R, enter citation("TSCAN")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


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PDF R Script TSCAN: Tools for Single-Cell ANalysis
PDF   Reference Manual


biocViews GUI, GeneExpression, Software, Visualization
Version 1.24.0
In Bioconductor since BioC 3.0 (R-3.1) (5.5 years)
License GPL(>=2)
Depends R (>= 2.10.0)
Imports ggplot2, shiny, plyr, grid, fastICA, igraph, combinat, mgcv, mclust, gplots
Suggests knitr
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

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Follow Installation instructions to use this package in your R session.

Source Package TSCAN_1.24.0.tar.gz
Windows Binary TSCAN_1.24.0.zip
Mac OS X 10.11 (El Capitan) TSCAN_1.24.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/TSCAN
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TSCAN
Package Short Url https://bioconductor.org/packages/TSCAN/
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