Rbowtie2

DOI: 10.18129/B9.bioc.Rbowtie2    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see Rbowtie2.

An R Wrapper for Bowtie2 and AdapterRemoval

Bioconductor version: 3.10

This package provides an R wrapper of the popular bowtie2 sequencing reads aligner and AdapterRemoval, a convenient tool for rapid adapter trimming, identification, and read merging.

Author: Zheng Wei, Wei Zhang

Maintainer: Zheng Wei <wzweizheng at qq.com>

Citation (from within R, enter citation("Rbowtie2")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Rbowtie2")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rbowtie2")

 

HTML R Script An Introduction to Rbowtie2
PDF   Reference Manual
Text   NEWS

Details

biocViews Alignment, Preprocessing, Sequencing, Software
Version 1.8.0
In Bioconductor since BioC 3.6 (R-3.4) (2.5 years)
License GPL (>= 3)
Depends R (>= 3.5)
Imports
LinkingTo
Suggests knitr
SystemRequirements C++11
Enhances
URL
Depends On Me
Imports Me esATAC
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Rbowtie2_1.8.0.tar.gz
Windows Binary Rbowtie2_1.8.0.zip
Mac OS X 10.11 (El Capitan) Rbowtie2_1.8.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Rbowtie2
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Rbowtie2
Package Short Url https://bioconductor.org/packages/Rbowtie2/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: