DOI: 10.18129/B9.bioc.Oscope    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see Oscope.

Oscope - A statistical pipeline for identifying oscillatory genes in unsynchronized single cell RNA-seq

Bioconductor version: 3.10

Oscope is a statistical pipeline developed to identifying and recovering the base cycle profiles of oscillating genes in an unsynchronized single cell RNA-seq experiment. The Oscope pipeline includes three modules: a sine model module to search for candidate oscillator pairs; a K-medoids clustering module to cluster candidate oscillators into groups; and an extended nearest insertion module to recover the base cycle order for each oscillator group.

Author: Ning Leng

Maintainer: Ning Leng <lengning1 at gmail.com>

Citation (from within R, enter citation("Oscope")):


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PDF R Script Oscope_vigette
PDF   Reference Manual
Text   NEWS


biocViews GeneExpression, ImmunoOncology, RNASeq, Sequencing, Software, StatisticalMethod
Version 1.16.0
In Bioconductor since BioC 3.2 (R-3.2) (4.5 years)
License Artistic-2.0
Depends EBSeq, cluster, testthat, BiocParallel
Suggests BiocStyle
Depends On Me
Imports Me
Suggests Me
Links To Me
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Source Package Oscope_1.16.0.tar.gz
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