DOI: 10.18129/B9.bioc.OmicsMarkeR    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see OmicsMarkeR.

Classification and Feature Selection for 'Omics' Datasets

Bioconductor version: 3.10

Tools for classification and feature selection for 'omics' level datasets. It is a tool to provide multiple multivariate classification and feature selection techniques complete with multiple stability metrics and aggregation techniques. It is primarily designed for analysis of metabolomics datasets but potentially extendable to proteomics and transcriptomics applications.

Author: Charles E. Determan Jr. <cdetermanjr at>

Maintainer: Charles E. Determan Jr. <cdetermanjr at>

Citation (from within R, enter citation("OmicsMarkeR")):


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PDF R Script A Short Introduction to the OmicMarkeR Package
PDF   Reference Manual
Text   NEWS


biocViews Classification, FeatureExtraction, Metabolomics, Software
Version 1.18.0
In Bioconductor since BioC 3.1 (R-3.2) (5 years)
License GPL-3
Depends R (>= 3.2.0)
Imports graphics, stats, utils, plyr (>= 1.8), data.table (>= 1.9.4), caret (>= 6.0-37), DiscriMiner (>= 0.1-29), e1071 (>= 1.6-1), randomForest (>= 4.6-10), gbm (>= 2.1), pamr (>= 1.54.1), glmnet (>= 1.9-5), caTools (>= 1.14), foreach (>= 1.4.1), permute (>= 0.7-0), assertive (>= 0.3-0), assertive.base (>= 0.0-1)
Suggests testthat, BiocStyle, knitr
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