MACSQuantifyR

DOI: 10.18129/B9.bioc.MACSQuantifyR    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see MACSQuantifyR.

Fast treatment of MACSQuantify FACS data

Bioconductor version: 3.10

Automatically process the metadata of MACSQuantify FACS sorter. It runs multiple modules: i) imports of raw file and graphical selection of duplicates in well plate, ii) computes statistics on data and iii) can compute combination index.

Author: Raphaël Bonnet [aut, cre], Marielle Nebout [dtc],Giulia Biondani [dtc], Jean-François Peyron[aut,ths], Inserm [fnd]

Maintainer: Raphaël Bonnet <raphael.bonnet at univ-cotedazur.fr>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MACSQuantifyR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MACSQuantifyR")

 

HTML	R Script	MACSQuantifyR_quick_introduction
HTML	R Script	MACSQuantifyR_simple_pipeline
HTML	R Script	MACSQuantifyR_step_by_step_analysis
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, DataRepresentation, FlowCytometry, GUI, Normalization, Preprocessing, Software
Version	1.0.1
In Bioconductor since	BioC 3.10 (R-3.6) (< 6 months)
License	Artistic-2.0
Depends
Imports	readxl, graphics, tools, utils, grDevices, ggplot2, ggrepel, methods, stats, latticeExtra, lattice, rmarkdown, png, grid, gridExtra, prettydoc, rvest, xml2
LinkingTo
Suggests	knitr, testthat, R.utils, spelling
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MACSQuantifyR_1.0.1.tar.gz
Windows Binary	MACSQuantifyR_1.0.1.zip
Mac OS X 10.11 (El Capitan)	MACSQuantifyR_1.0.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MACSQuantifyR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MACSQuantifyR
Package Short Url	https://bioconductor.org/packages/MACSQuantifyR/
Package Downloads Report	Download Stats