DOI: 10.18129/B9.bioc.LEA    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see LEA.

LEA: an R package for Landscape and Ecological Association Studies

Bioconductor version: 3.10

LEA is an R package dedicated to landscape genomics and ecological association tests. LEA can run analyses of population structure and genomewide tests for local adaptation. The package includes statistical methods for estimating ancestry coefficients from large genotypic matrices and for evaluating the number of ancestral populations (snmf, pca). It performs statistical tests using latent factor mixed models for identifying genetic polymorphisms that exhibit association with environmental gradients or phenotypic traits (lfmm). LEA is mainly based on optimized C programs that can scale with the dimension of large data sets.

Author: Eric Frichot <eric.frichot at gmail.com>, Olivier Francois <olivier.francois at grenoble-inp.fr>

Maintainer: Eric Frichot <eric.frichot at gmail.com>, Olivier Francois <olivier.francois at grenoble-inp.fr>

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biocViews Clustering, Regression, Software, StatisticalMethod
Version 2.8.0
In Bioconductor since BioC 3.1 (R-3.2) (5 years)
License GPL-3
Depends R (>= 3.3.0), methods, stats, utils, graphics
Suggests knitr
URL http://membres-timc.imag.fr/Olivier.Francois/lea.html
Depends On Me
Imports Me
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Source Package LEA_2.8.0.tar.gz
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