DOI: 10.18129/B9.bioc.HPAanalyze    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see HPAanalyze.

Retrieve and analyze data from the Human Protein Atlas

Bioconductor version: 3.10

Provide functions for retrieving, exploratory analyzing and visualizing the Human Protein Atlas data.

Author: Anh Nhat Tran [aut, cre]

Maintainer: Anh Nhat Tran <trannhatanh89 at gmail.com>

Citation (from within R, enter citation("HPAanalyze")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script 1. HPAanalyze quick start guide: Acquire and visualize the Human Protein Atlas (HPA) data in one function
HTML R Script 2. HPAanalyze in-depth: Working with Human Protein Atlas (HPA) data in R
HTML R Script 3. HPAanalyze use case: Combine with your Human Protein Atlas (HPA) queries
HTML R Script 4. HPAanalyze use case: Working with Human Protein Atlas (HPA) xml files offline
HTML R Script 5. HPAanalyze use case: Export Human Protein Atlas (HPA) data as JSON
HTML R Script 6. HPAanalyze use case: Download histology images from the Human Protein Atlas
HTML R Script 99. Code for figures from HPAanalyze paper
PDF   Reference Manual
Text   NEWS


biocViews CellBiology, Proteomics, Software, Visualization
Version 1.4.3
In Bioconductor since BioC 3.8 (R-3.5) (1.5 years)
License GPL-3 + file LICENSE
Depends R (>= 3.5.0)
Imports dplyr, openxlsx, ggplot2, tibble, xml2, stats, utils, gridExtra
Suggests knitr, rmarkdown, devtools, BiocStyle
Depends On Me
Imports Me
Suggests Me
Links To Me
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Follow Installation instructions to use this package in your R session.

Source Package HPAanalyze_1.4.3.tar.gz
Windows Binary HPAanalyze_1.4.3.zip
Mac OS X 10.11 (El Capitan) HPAanalyze_1.4.3.tgz
Source Repository git clone https://git.bioconductor.org/packages/HPAanalyze
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HPAanalyze
Package Short Url https://bioconductor.org/packages/HPAanalyze/
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