DOI: 10.18129/B9.bioc.CoRegFlux    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see CoRegFlux.


Bioconductor version: 3.10

CoRegFlux aims at providing tools to integrate reverse engineered gene regulatory networks and gene-expression into metabolic models to improve prediction of phenotypes, both for metabolic engineering, through transcription factor or gene (TF) knock-out or overexpression in various conditions as well as to improve our understanding of the interactions and cell inner-working.

Author: Pauline Trébulle, Daniel Trejo-Banos, Mohamed Elati

Maintainer: Pauline Trébulle and Mohamed Elati <coregflux at>

Citation (from within R, enter citation("CoRegFlux")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



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biocViews GeneExpression, GenePrediction, GeneRegulation, Network, Software, SystemsBiology, Transcription
Version 1.2.0
In Bioconductor since BioC 3.9 (R-3.6) (1 year)
License GPL-3
Depends R (>= 3.6)
Imports CoRegNet, sybil
Suggests glpkAPI, testthat, knitr, rmarkdown, digest, R.cache, ggplot2, plyr, igraph, methods, latex2exp, rBayesianOptimization
SystemRequirements GLPK (>= 4.42)
Depends On Me
Imports Me
Suggests Me
Links To Me
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Source Package CoRegFlux_1.2.0.tar.gz
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Mac OS X 10.11 (El Capitan) CoRegFlux_1.2.0.tgz
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