DOI: 10.18129/B9.bioc.CellMixS    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see CellMixS.

Evaluate Cellspecific Mixing

Bioconductor version: 3.10

Evaluate Cellspecific Mixing Scores (CMS) for different batches/groups in scRNA-seq data.

Author: Almut Lütge

Maintainer: Almut Lütge <almut.luetge at uzh.ch>

Citation (from within R, enter citation("CellMixS")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


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HTML R Script Explore data integration and batch effects
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biocViews BatchEffect, GeneExpression, SingleCell, Software, Transcriptomics
Version 1.2.6
In Bioconductor since BioC 3.9 (R-3.6) (1 year)
License GPL (>=2)
Depends kSamples, R (>= 3.6)
Imports BiocNeighbors, ggplot2, scater, viridis, cowplot, SummarizedExperiment, SingleCellExperiment, tidyr, magrittr, dplyr, ggridges, stats, purrr, listarrays, methods, BiocParallel, BiocGenerics
Suggests BiocStyle, knitr, rmarkdown, testthat, limma
URL https://github.com/almutlue/CellMixS
BugReports https://github.com/almutlue/CellMixS/issues
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Follow Installation instructions to use this package in your R session.

Source Package CellMixS_1.2.6.tar.gz
Windows Binary CellMixS_1.2.6.zip
Mac OS X 10.11 (El Capitan) CellMixS_1.2.6.tgz
Source Repository git clone https://git.bioconductor.org/packages/CellMixS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CellMixS
Package Short Url https://bioconductor.org/packages/CellMixS/
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