setGate {flowWorkspace} | R Documentation |
update the population node with a flowCore-compatible gate object
setGate(obj, y, value, ...) ## S4 method for signature 'GatingHierarchy,character,filter' setGate(obj, y, value, ...) gh_pop_set_gate(obj, y, value, negated = FALSE, ...) ## S4 method for signature 'GatingSet,character,ANY' setGate(obj, y, value, ...) gs_pop_set_gate(obj, y, value, ...)
obj |
|
y |
|
value |
|
... |
other aguments |
negated |
|
Usually recompute is followed by this call since updating a gate doesn't re-calculating the cell events within the gate automatically. see filterObject for the gate types that are currently supported.
## Not run: rg1 <- rectangleGate("FSC-H"=c(200,400), "SSC-H"=c(250, 400), filterId="rectangle") rg2 <- rectangleGate("FSC-H"=c(200,400), "SSC-H"=c(250, 400), filterId="rectangle") flist <- list(rg1,rg2) names(flist) <- sampleNames(gs[1:2]) gs_pop_set_gate(gs[1:2], "lymph", flist) recompute(gs[1:2], "lymph") ## End(Not run)