getData,GatingHierarchy-method {flowWorkspace} | R Documentation |
get gated flow data from a GatingHierarchy/GatingSet/GatingSetList
## S4 method for signature 'GatingHierarchy' getData(obj, y, ...) gh_pop_get_data(obj, y = "root", inverse.transform = FALSE, ...) ## S4 method for signature 'GatingSet' getData(obj, y, ...) gs_pop_get_data(obj, y = "root", inverse.transform = FALSE, ...) ## S4 method for signature 'GatingSetList' getData(obj, y, ...)
obj |
A |
y |
|
... |
arguments passed to ncdfFlow::[[ |
inverse.transform |
logical flag indicating whether to inverse transform the data |
Returns a flowFrame/flowSet containing the events in the gate defined at node y
.
Subset membership can be obtained using gh_pop_get_indices
.
Population statistics can be obtained using getPop
and gh_pop_compare_stats
.
When calling gh_pop_get_data
on a GatingSet,the trees representing the GatingHierarchy for each sample in the GaingSet are presumed to have the same structure.
To update the data, use gs_cyto_data
method.
A flowFrame
object if obj
is a GatingHierarchy.
A flowSet
or ncdfFlowSet
if a GatingSet
.
A ncdfFlowList
if a GatingSetList
.
gs_cyto_data
gh_pop_get_indices
gh_pop_compare_stats
## Not run: #G is a GatingSet geData(G,3) #get a flowSet constructed from the third node / population in the tree. geData(G,"cd4") #gh is a GatingHierarchy gh_pop_get_data(gh) ## End(Not run)