plotShiraishiModel {decompTumor2Sig} | R Documentation |
'plotShiraishiModel()' plots a single signature or the mutation frequency data for a single genome of the Shiraishi-type model.
plotShiraishiModel(mutData, numBases, trDir, colors = NULL)
mutData |
(Mandatory) The signature or genome mutation frequency data to be plotted. |
numBases |
The number of bases of the sequence pattern. |
trDir |
Logical value specifying whether transcription strand information is present. |
colors |
Vector of four colors to be used for the base data.
If |
Returns (or draws) a plot according to the Shiraishi model of mutational signatures.
Rosario M. Piro
Freie Universitaet Berlin
Maintainer: Rosario
M. Piro
E-Mail: <rmpiro@gmail.com> or <r.piro@fu-berlin.de>
http://rmpiro.net/decompTumor2Sig/
Krueger, Piro (2018) decompTumor2Sig: Identification of mutational
signatures active in individual tumors. BMC Bioinformatics (accepted for
publication).
Krueger, Piro (2017) Identification of Mutational Signatures Active in
Individual Tumors. NETTAB 2017 - Methods, Tools & Platforms for
Personalized Medicine in the Big Data Era, October 16-18, 2017, Palermo,
Italy. PeerJ Preprints 5:e3257v1, 2017.