isSignatureSet {decompTumor2Sig} | R Documentation |
'isSignatureSet()' checks whether the input object is a set (list) of
numeric objects compatible with either the Alexandrov format (probability
vectors; see isAlexandrovSet
) or the Shiraishi format (matrices or
data.frames of probabilities; see isShiraishiSet
).
NOTE: These can also be genomes compatible with one of the two formats!
isSignatureSet(x)
x |
Object to be checked. |
Logical value (true or false).
Rosario M. Piro
Freie Universitaet Berlin
Maintainer: Rosario
M. Piro
E-Mail: <rmpiro@gmail.com> or <r.piro@fu-berlin.de>
http://rmpiro.net/decompTumor2Sig/
Krueger, Piro (2018) decompTumor2Sig: Identification of mutational
signatures active in individual tumors. BMC Bioinformatics (accepted for
publication).
Krueger, Piro (2017) Identification of Mutational Signatures Active in
Individual Tumors. NETTAB 2017 - Methods, Tools & Platforms for
Personalized Medicine in the Big Data Era, October 16-18, 2017, Palermo,
Italy. PeerJ Preprints 5:e3257v1, 2017.
decompTumor2Sig
isAlexandrovSet
isShiraishiSet
### get Alexandrov signatures from COSMIC signAlexandrov <- readAlexandrovSignatures() isSignatureSet(signAlexandrov)