annotateEvents {SPLINTER}R Documentation

annotateEvents

Description

Gives detailed description of splicing event in terms of splicing outcome post translation. Currently supports exon skipping and intron retention events.

Usage

annotateEvents(thedata, db, bsgenome, outputdir, full_output = FALSE,
  output_prefix = "results")

Arguments

thedata

list. output of extractSpliceEvents.

db

TxDb object

bsgenome

BSGenome object

outputdir

character. relative output directory to current location.

full_output

logical. writes out detailed text report and generate figures.

output_prefix

character. text prefix for full_output files.

Value

list containing information on (1) data.frame with splicing regions (2) splice event type

Author(s)

Diana LOW


[Package SPLINTER version 1.12.0 Index]