print_interactions {OmnipathR}R Documentation

print interactions

Description

prints the interactions/ptms in a nice format

Usage

print_interactions(interDF, writeRefs = FALSE)

Arguments

interDF

data.frame with the interactions generated by any of the following functions: import_Omnipath_PTMS, import_Omnipath_Interactions, import_PathwayExtra_Interactions, import_KinaseExtra_Interactions, import_LigrecExtra_Interactions, import_TFregulons_Interactions, import_miRNAtarget_Interactions or import_AllInteractions

writeRefs

[FALSE] writes also the PubMed IDs if available

Value

Interactions displayed in a nice format

Examples

ptms = import_Omnipath_PTMS()
print_interactions(head(ptms))
print_interactions(tail(ptms),writeRefs=TRUE)
print_interactions(dplyr::filter(ptms,enzyme_genesymbol=="MAP2K1",
  substrate_genesymbol=="MAPK3"))

[Package OmnipathR version 1.0.1 Index]