import_Omnipath_PTMS {OmnipathR} | R Documentation |
imports the PTMs database from http://omnipathdb.org/ptms
import_Omnipath_PTMS( from_cache_file = NULL, filter_databases = get_ptms_databases(), select_organism = 9606 )
from_cache_file |
path to an earlier data file |
filter_databases |
PTMs not reported in these databases are
removed. See |
select_organism |
PTMs are available for human, mouse and rat. Choose among: 9606 human (default), 10116 rat and 10090 Mouse |
A data frame containing the information about ptms
get_ptms_databases,
import_Omnipath_Interactions
ptms = import_Omnipath_PTMS(filter_databases=c("PhosphoSite", "Signor"), select_organism=9606)