import_LigrecExtra_Interactions {OmnipathR}R Documentation

Imports from Omnipath webservice the interactions from ligrecextra dataset

Description

Imports the dataset from: http://omnipathdb.org/interactions?datasets=ligrecextra, which contains ligand-receptor interactions without literature reference

Usage

import_LigrecExtra_Interactions(
  from_cache_file = NULL,
  filter_databases = get_interaction_databases(),
  select_organism = 9606
)

Arguments

from_cache_file

path to an earlier data file

filter_databases

interactions not reported in these databases are removed. See get_interaction_databases for more information.

select_organism

Interactions are available for human, mouse and rat. Choose among: 9606 human (default), 10116 rat and 10090 Mouse

Value

A dataframe containing ligand-receptor interaction without literature reference

See Also

get_interaction_databases, import_AllInteractions

Examples

interactions <- import_LigrecExtra_Interactions(filter_databases=c("HPRD",
      "Guide2Pharma"), select_organism=9606)

[Package OmnipathR version 1.0.1 Index]