print_interactions {OmnipathR} | R Documentation |
prints the interactions/ptms in a nice format
print_interactions(interDF, writeRefs = FALSE)
interDF |
data.frame with the interactions generated by any of the
following functions: |
writeRefs |
[FALSE] writes also the PubMed IDs if available |
Interactions displayed in a nice format
ptms = import_Omnipath_PTMS() print_interactions(head(ptms)) print_interactions(tail(ptms),writeRefs=TRUE) print_interactions(dplyr::filter(ptms,enzyme_genesymbol=="MAP2K1", substrate_genesymbol=="MAPK3"))