get_signed_ptms {OmnipathR} | R Documentation |
ptms data does not contain sign (activation/inhibition), we generate this information based on the interaction network
get_signed_ptms( ptms = import_Omnipath_PTMS(), interactions = import_Omnipath_Interactions() )
ptms |
ptms data frame generated by |
interactions |
interaction data frame generated by
|
data.frame of ptms with is_inhibition and is_stimulation columns
import_Omnipath_PTMS
import_Omnipath_Interactions
ptms = import_Omnipath_PTMS(filter_databases=c("PhosphoSite", "Signor")) interactions = import_Omnipath_Interactions() ptms = get_signed_ptms(ptms,interactions)