import_PathwayExtra_Interactions {OmnipathR} | R Documentation |
Imports the dataset from: http://omnipathdb.org/interactions?datasets=pathwayextra, which contains activity flow interactions without literature reference
import_PathwayExtra_Interactions( from_cache_file = NULL, filter_databases = get_interaction_databases(), select_organism = 9606 )
from_cache_file |
path to an earlier data file |
filter_databases |
interactions not reported in these databases are
removed. See |
select_organism |
Interactions are available for human, mouse and rat. Choose one of those: 9606 human (default), 10116 rat or 10090 Mouse |
A dataframe containing activity flow interactions between proteins without literature reference
get_interaction_databases,
import_AllInteractions
interactions <- import_PathwayExtra_Interactions(filter_databases=c("BioGRID","IntAct"), select_organism = 9606)