import_miRNAtarget_Interactions {OmnipathR}R Documentation

Imports from Omnipath webservice the interactions from miRNAtarget dataset

Description

Imports the dataset from: http://omnipathdb.org/interactions?datasets=mirnatarget, which contains miRNA-mRNA and TF-miRNA interactions

Usage

import_miRNAtarget_Interactions(
  from_cache_file = NULL,
  filter_databases = get_interaction_databases()
)

Arguments

from_cache_file

path to an earlier data file

filter_databases

interactions not reported in these databases are removed. See get_interaction_databases for more information.

Value

A dataframe containing miRNA-mRNA and TF-miRNA interactions

See Also

get_interaction_databases, import_AllInteractions

Examples

interactions <- 
  import_miRNAtarget_Interactions(filter_databases=c("miRTarBase",
  "miRecords"))

[Package OmnipathR version 1.0.1 Index]