printPath_es {OmnipathR} | R Documentation |
prints the interactions in the path in a nice format
printPath_es(edgeSeq, G)
edgeSeq |
edge sequence |
G |
igraph object (from ptms or any interaction dataset) |
Interactions displayed in a nice format
interactions = import_Omnipath_Interactions(filter_databases=c("SignaLink3")) OPI_g = interaction_graph(interactions = interactions ) printPath_es(shortest_paths(OPI_g,from = "TYRO3",to = "STAT3", output = 'epath')$epath[[1]],OPI_g)