interaction_graph {OmnipathR} | R Documentation |
transforms the interactions data.frame to an igraph object
interaction_graph(interactions = interactions)
An igraph object
import_Omnipath_Interactions
,
import_PathwayExtra_Interactions
,
import_KinaseExtra_Interactions
,
import_LigrecExtra_Interactions
,
import_TFregulons_Interactions
,
import_miRNAtarget_Interactions
or
import_AllInteractions
interactions = import_Omnipath_Interactions(filter_databases=c("SignaLink3")) OPI_g = interaction_graph(interactions)