get_signed_ptms {OmnipathR}R Documentation

get signs for ptms interactions

Description

ptms data does not contain sign (activation/inhibition), we generate this information based on the interaction network

Usage

get_signed_ptms(
  ptms = import_Omnipath_PTMS(),
  interactions = import_Omnipath_Interactions()
)

Arguments

ptms

ptms data frame generated by import_Omnipath_PTMS

interactions

interaction data frame generated by import_Omnipath_Interactions

Value

data.frame of ptms with is_inhibition and is_stimulation columns

See Also

import_Omnipath_PTMS import_Omnipath_Interactions

Examples

ptms = import_Omnipath_PTMS(filter_databases=c("PhosphoSite", "Signor"))
interactions = import_Omnipath_Interactions()
ptms = get_signed_ptms(ptms,interactions)

[Package OmnipathR version 1.0.1 Index]