import_Omnipath_intercell {OmnipathR}R Documentation

Import Omnipath Intercell Data

Description

imports the intercell data stored in Omnipath database from http://omnipathdb.org/intercell. Intercell provides information on the roles in inter-cellular signaling. E.g. if a protein is a ligand, a receptor, an extracellular matrix (ECM) component, etc.

Usage

import_Omnipath_intercell(
  from_cache_file = NULL,
  select_categories = get_intercell_categories()
)

Arguments

from_cache_file

path to an earlier data file

select_categories

vector containing the categories to be retrieved. All the genes belonging to that category will be returned. For furter information about the categories see get_intercell_categories

Value

A dataframe cotaining information about roles in inter-cellular signaling.

See Also

get_intercell_categories

Examples

intercell = import_Omnipath_intercell(select_categories=c("ecm"))

[Package OmnipathR version 1.0.1 Index]