import_Omnipath_intercell {OmnipathR} | R Documentation |
imports the intercell data stored in Omnipath database from http://omnipathdb.org/intercell. Intercell provides information on the roles in inter-cellular signaling. E.g. if a protein is a ligand, a receptor, an extracellular matrix (ECM) component, etc.
import_Omnipath_intercell( from_cache_file = NULL, select_categories = get_intercell_categories() )
from_cache_file |
path to an earlier data file |
select_categories |
vector containing the categories to be retrieved.
All the genes belonging to that category will be returned. For furter
information about the categories see |
A dataframe cotaining information about roles in inter-cellular signaling.
intercell = import_Omnipath_intercell(select_categories=c("ecm"))