assignLastExonsStopSite {ORFik}R Documentation

Reassign the stop positions of the last exons per group

Description

Per group in GRangesList, assign the most upstream site.

Usage

assignLastExonsStopSite(grl, newStops)

Arguments

grl

a GRangesList object

newStops

an integer vector of same length as grl, with new start values (absolute coordinates, not relative)

Details

make sure your grl is sorted, since stop of "-" strand objects should be the min start in group, use ORFik:::sortPerGroup(grl) to get sorted grl.

Value

the same GRangesList with new stop sites

See Also

Other GRanges: assignFirstExonsStartSite(), downstreamFromPerGroup(), downstreamOfPerGroup(), upstreamFromPerGroup(), upstreamOfPerGroup()


[Package ORFik version 1.6.9 Index]