asTX {ORFik} | R Documentation |
Map range coordinates between features in the genome and transcriptome (reference) space.
asTX(grl, reference)
grl |
a |
reference |
a GrangesList of ranges that include and are bigger or equal to grl ig. cds is grl and gene can be reference |
Similar to GenomicFeatures' pmapToTranscripts, but in this version the grl ranges are compared to reference ranges with same name, not by index. And it has a security fix.
a GRangesList in transcript coordinates
Other ExtendGenomicRanges:
coveragePerTiling()
,
overlapsToCoverage()
,
reduceKeepAttr()
,
tile1()
,
txSeqsFromFa()
,
windowPerGroup()