QCplots {ORFik} | R Documentation |
Correlation plots default to mRNA covering reads. Meta plots defaults to leader, cds, trailer.
QCplots( df, region = "mrna", stats_folder = paste0(dirname(df$filepath[1]), "/QC_STATS/") )
df |
an ORFik |
region |
a character (default: mrna), make raw count matrices of whole mrnas or one of (leaders, cds, trailers) |
stats_folder |
directory to save |
Output will be stored in same folder as the libraries in df.
NULL (objects stored to disc)