optimizeReads {ORFik}R Documentation

Find optimized subset of valid reads

Description

If more than a million reads, keep only the ones that overlap within the grl ranges.

Usage

optimizeReads(grl, reads)

Arguments

grl

a GRangesList or GRanges object

reads

a GRanges or GAlignment object

Value

the reads as GRanges or GAlignment

See Also

Other utils: bedToGR(), convertToOneBasedRanges(), fimport(), findFa(), fread.bed(), readBam(), readWig()


[Package ORFik version 1.6.9 Index]