RNAseqQA {KnowSeq}R Documentation

RNAseqQA performs the quality analysis of an expression matrix.

Description

RNAseqQA performs the quality analysis of an expression matrix. This function adapts the RNA-seq data in order to allows using arrayQualityMetrics expression analysis.

Usage

RNAseqQA(expressionMatrix, outdir = "RNAseqQA")

Arguments

expressionMatrix

A matrix that contains the gene expression values.

outdir

The output directory to store the report of arrayQualityMetrics

Value

Nothing to return.

Examples

dir <- system.file("extdata", package="KnowSeq")
load(paste(dir,"/expressionExample.RData",sep = ""))

RNAseqQA(expressionMatrix)

[Package KnowSeq version 1.0.0 Index]