sojourner: An R package for statistical analysis of single molecule trajectories


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Documentation for package ‘sojourner’ version 1.0.2

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sojourner-package sojourner - statistical analysis of single molecule trajectories
.boot.se.onecomp bootstrap
.dwellTime dwellTime
.exportRowWise exportTrackll
.get.seRange getCI
.linkSkippedFrames linkSkippedFrames
.one.comp.fit.rt Fitting Residence time (1-CDF)
.plotLocalizations.Density plotLocalizations_Density
.plotTrack plotTrack
.plotTrackOverlay.Dcoef plotTrackOverlay_Dcoef
.singlecompFit fitNormDistr
bootstrap bootstrap
combineTrackll combineTrackll
compareFolder compareFolder
compare_RT_CDF Compare Residence time/Survival Curve (1-CDF)
createTrackll createTrackll
Dcoef Dcoef
densityMaskTracks densityMaskTracks
displacement.track displacementCDF
displacementCDF displacementCDF
dispVariance dispVariance
dispVariance_track dispVariance
dwellTime dwellTime
exportTrackll exportTrackll
filterOnCell maskTracks
filterTrack filterTrack
fitCDF fitCDF
fitNormDistr fitNormDistr
fitRT Fitting Residence time (1-CDF)
getCI getCI
hmmTrackll hmmTrackll
kernelDensity densityMaskTracks
linkSkippedFrames linkSkippedFrames
maskPoint maskTracks
maskTracks maskTracks
mergeTracks mergeTracks
msd msd
msd_perc msd
msd_track msd
msd_track_vecdt msd
one.comp.fit fitCDF
plotComponentTrackOverlay plotTrack
plotIndividualTracks plotIndividualTracks
plotLines densityMaskTracks
plotLinesTrackl densityMaskTracks
plotLocalizations_Density plotLocalizations_Density
plotMask plotTrack
plotNucTrackOverlay plotTrack
plotNucTrackOverlayTrackl plotTrack
plotPoints densityMaskTracks
plotPointsTrackl densityMaskTracks
plotTrack plotTrack
plotTrackFromIndex plotTrack
plotTrackOverlay plotTrack
plotTrackOverlay_Dcoef plotTrackOverlay_Dcoef
sampleTracks maskTracks
selComponentTracks selComponentTracks
sojourner sojourner - statistical analysis of single molecule trajectories
sojournerGUI sojournerGUI
squareDisp squareDisp
squareDispCpp squareDisp
trackLength filterTrack
trimTrack filterTrack