ldblock-package |
c("\Sexpr[results=rd,stage=build]tools:::Rd_package_title(\"#1\")", "ldblock")data structures for linkage disequilibrium measures in populations |
downloadPopByChr |
download hapmap resource with LD estimates |
expandSnpSet |
Given a set of SNP identifiers, use LD to expand the set to include linked loci |
hmld |
import hapmap LD data and create a structure for its management; generates a sparse matrix representation of pairwise LD statistics and binds metadata on variant name and position |
ldblock |
c("\Sexpr[results=rd,stage=build]tools:::Rd_package_title(\"#1\")", "ldblock")data structures for linkage disequilibrium measures in populations |
ldByGene |
Obtain LD statistics in region specified by a gene model. |
ldmat |
use LDmat API from NCI LDlink service |
ldmat-method |
accessor for matrix component |
ldstruct-class |
Class '"ldstruct"' |
s3_1kg |
Create a URL referencing 1000 genomes content in AWS S3. |
stack1kg |
couple together a group of VCFs |