Decomposing Heterogeneous Cohorts using Omic Data Profiling


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Documentation for package ‘deco’ version 1.2.0

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deco-package DECO: DEcomposing heterogeneous Cohorts from Omic profiling.
ALCLdata Subset of microarray gene expression data from Anaplastic Large Cell Leukemia disease.
AnnotateDECO DECO annotating function
deco DECO: DEcomposing heterogeneous Cohorts from Omic profiling.
deco-class Class '"deco"'
decoNSCA Non-Symmetrical Correspondence Analysis (NSCA) applied to a subsampled dataset
decoRDA Subsampling function to find out differential events along samples from an omic dataset
decoReport Report of DECO analyisis
featureTable Accessor to 'featureTable' slot of 'deco-class' objects.
featureTable-method Class '"deco"'
NSCAcluster Accessor to 'NSCAcluster' slot of 'deco-class' objects.
NSCAcluster-method Class '"deco"'
plotAssociationH Plot to visualize association among DECO subclasses and sample information (phenotype).
plotDECOProfile Feature profile from DECO analysis
plotGainingH Gaining plots for using h-statistic instead original omic data.
plotHeatmapH Heatmap corresponding to h-statistic matrix provided by DECO analysis.
show-method Class '"deco"'
summary-method Class '"deco"'