cytofast - A quick visualization and analysis tool for CyTOF data


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Documentation for package ‘cytofast’ version 1.2.0

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cellCounts Extract cell counts from cfList
cfList Class cfList
cfList-class Class cfList
counts Class cfList
counts-method Class cfList
cytoBoxplots Draw boxplots for cfList
cytoHeatmaps Draw heatmaps for cfList
cytottest preform t-test on cfList
drawTree Draw a dendogram with ggplot
expr Class cfList
expr-method Class cfList
msiPlot Draw a density (median signal intensity) plot
readCytosploreFCS Read .fcs files created by cytosplore
results Class cfList
results-method Class cfList
samples Class cfList
samples-method Class cfList
show-method Class cfList
spitzer Spitzer meta file
[-method Extract parts of cfList