Inference and visualisation of Single-Cell RNA-seq data as a hierarchical tree structure


[Up] [Top]

Documentation for package ‘cellTree’ version 1.16.0

Help Pages

cellTree-package Inference and visualisation of Single-Cell RNA-seq Data data as a hierarchical tree structure
cell.ordering.table Ranking of cells according to backbone tree structure
cellTree Inference and visualisation of Single-Cell RNA-seq Data data as a hierarchical tree structure
compute.backbone.tree Backbone Tree construction
compute.go.enrichment Gene Ontology enrichment analysis
compute.lda LDA model inference
ct.plot.go.dag Gene Ontology enrichment sets plotting
ct.plot.grouping Plot cell tree with grouping information
ct.plot.heatmap Gene Expression Heatmap
ct.plot.topics Plot cell tree with topic distributions
get.cell.dists Cell Pairwise-Distance Matrix
go.results.to.latex LaTeX output for Gene Ontology Enrichment results
HSMM_lda_model Pre-computed LDA model for HSMMSingleCell data