XCI-inference


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Documentation for package ‘XCIR’ version 1.0.0

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XCIR-package Estimating inactivated X chromosome expression
addAnno Read annotation file
annotateX Annotate
betaBinomXI Fit mixture model
betaParam Converting beta distribution parameters
consensusXCI XCI consensus
getGenicDP Get expression at the gene level
getXCIstate Classify X-genes
mart_genes biomaRt genes
plotBBCellFrac Plot cell fraction estimates
plotQC Plot QC
readRNASNPs Read SNPs from RNA-Seq
readVCF4 Read VCF file
readXCI Read a list of known inactivated genes
sample_clean Sample estimates
XCIR Estimating inactivated X chromosome expression