Breakpoint analysis of time-course expression data


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Documentation for package ‘Trendy’ version 1.8.2

Help Pages

breakpointDist Distribution of breakpoints
breakpointFit break point fits
extractPattern Extract pattern from segmented regression
fitSegBIC Fit segmented regression models on a feature/gene
formatFunc internal helper function to format results
formatResults Function to format results for saving.
getCounts getCounts
plotFeature Plot features of interest
results results
topTrendy obtain top genes from trendy results
trendHeatmap Draw heatmap of gene expression trends
trendy Trendy
trendyExampleData Example dataset for Trendy
trendyShiny Trendy shiny app to interactively vizualize results after running trendy().