Tools for the analysis of heterogeneous tissues


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Documentation for package ‘TOAST’ version 1.0.0

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assignCellType Align cell types when reference proportions are known
csDeconv Improve reference-free deconvolution using cross-cell type differential analysis
csTest Testing differential signals for specified phenotype and cell type(s).
DEVarSelect Feature selection for reference-free deconvolution using cross-cell type differential analysis
findRefinx findRefinx
fitModel Fit model with proportions and phenotypes.
makeDesign Generate design matrix from input phenotypes and proportions.
RA_100samples An example dataset for cellular proportion estimation and multiple factor design