A Segmental Maximum A Posteriori Approach to Array-CGH Copy Number Profiling


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Documentation for package ‘SMAP’ version 1.50.0

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A Class "SMAPHMM": A class to manage HMMs for the SMAP package
chromosome Class "SMAPObservations": A class to manage microarray observations for the SMAP package
endPosition Class "SMAPObservations": A class to manage microarray observations for the SMAP package
GBM Glioblastoma multiforme array CGH data
HMM Class "SMAPProfile"
name Class "SMAPObservations": A class to manage microarray observations for the SMAP package
noObservations Class "SMAPObservations": A class to manage microarray observations for the SMAP package
noStates Class "SMAPHMM": A class to manage HMMs for the SMAP package
observations Class "SMAPProfile"
P Class "SMAPProfile"
Phi Class "SMAPHMM": A class to manage HMMs for the SMAP package
Pi Class "SMAPHMM": A class to manage HMMs for the SMAP package
plot-method Class "SMAPObservations": A class to manage microarray observations for the SMAP package
Q Class "SMAPProfile"
reporterId Class "SMAPObservations": A class to manage microarray observations for the SMAP package
smap smap: A Segmental Maximum A Posteriori Approach to Array-CGH Copy Number Profiling
SMAPHMM Constructor for "SMAPHMM" objects
SMAPHMM-class Class "SMAPHMM": A class to manage HMMs for the SMAP package
SMAPObservations Constructor for "SMAPObservations" objects
SMAPObservations-class Class "SMAPObservations": A class to manage microarray observations for the SMAP package
SMAPProfile-class Class "SMAPProfile"
SMAPProfiles-class Class "SMAPProfiles"
startPosition Class "SMAPObservations": A class to manage microarray observations for the SMAP package
value Class "SMAPObservations": A class to manage microarray observations for the SMAP package