classification_results | Example of output from designSampleSizeClassification function |
designSampleSizeClassification | Estimate the mean predictive accuracy and mean protein importance over all the simulated datasets |
designSampleSizeClassificationPlots | Visualization for sample size calculation in classification |
designSampleSizeHypothesisTestingPlot | Sample size calculation plot for hypothesis testing |
designSampleSizePCAplot | PCA plot for each simulation |
estimateVar | Estimate the mean abundance and variance of each protein in each condition. |
meanSDplot | Mean-SD plot |
MSstatsSampleSize | MSstatsSampleSize: A package for optimal design of high-dimensional MS-based proteomics experiment |
OV_SRM_train | The training set from a study for subjects with ovarian cancer |
OV_SRM_train_annotation | Annotation file for 'OV_SRM_train', |
simulateDataset | Simulate datasets with the given number of biological replicates and proteins based on the input _data_ |
simulated_datasets | Example of output from simulateDataset function |
variance_estimation | Example of output from estimateVar function |