ENCODExplorer-package	ENCODExplorer
buildConsensusPeaks	buildConsensusPeaks
buildExpressionSummary	buildExpressionSummary
choose_interactive_value	choose_interactive_value
clean_column	clean_column
clean_table	clean_table
combined_regions,GenomicOverlaps-method	combined_regions-GenomicOverlaps-method
combined_regions<-,GenomicOverlaps,GRanges-method	combined_regions-set-GenomicOverlaps-GRanges-method
consensus	ENCODEBindingConsensus-class
consensus,ENCODEBindingConsensus,ENCODEBindingConsensus-method	ENCODEBindingConsensus-class
consensus,ENCODEBindingConsensus-method	ENCODEBindingConsensus-class
consensus_indices	consensus_indices
consensus_regions	consensus_regions
createDesign	createDesign
downloadEncode	downloadEncode
download_dt_file	download_dt_file
download_single_file	download_single_file
ENCODEBindingConsensus-class	ENCODEBindingConsensus-class
ENCODEExpressionSummary-class	ENCODEExpressionSummary-class
ENCODESummary-class	ENCODESummary-class
ENCODExplorer	ENCODExplorer
files	ENCODESummary-class
files,ENCODESummary,ENCODESummary-method	ENCODESummary-class
files,ENCODESummary-method	ENCODESummary-class
file_metadata	ENCODESummary-class
file_metadata,ENCODESummary,ENCODESummary-method	ENCODESummary-class
file_metadata,ENCODESummary-method	ENCODESummary-class
fuzzySearch	fuzzySearch
GenomicOverlaps	GenomicOverlaps
GenomicOverlaps-class	GenomicOverlaps-class
get_encode_df	get_encode_df
get_encode_df_demo	get_encode_df_demo
get_encode_df_full	get_encode_df_full
initial_regions,GenomicOverlaps-method	initial_regions-GenomicOverlaps-method
intersect_indices	intersect_indices
intersect_matrix	intersect_matrix
intersect_regions	intersect_regions
length,ENCODESummary-method	ENCODESummary-class
length,GenomicOverlaps-method	length-GenomicOverlaps-method
metadata,ENCODESummary,ENCODESummary-method	ENCODESummary-class
metadata,ENCODESummary-method	ENCODESummary-class
metric	ENCODEExpressionSummary-class
metric,ENCODEBindingConsensus,ENCODEBindingConsensus-method	ENCODEExpressionSummary-class
metric,ENCODEExpressionSummary-method	ENCODEExpressionSummary-class
metric_data	ENCODEExpressionSummary-class
metric_data,ENCODEBindingConsensus,ENCODEBindingConsensus-method	ENCODEExpressionSummary-class
metric_data,ENCODEExpressionSummary-method	ENCODEExpressionSummary-class
names,ENCODESummary-method	ENCODESummary-class
names,GenomicOverlaps-method	names-GenomicOverlaps-method
names<-,ENCODEBindingConsensus,character-method	ENCODEBindingConsensus-class
names<-,ENCODEExpressionSummary,character-method	ENCODEExpressionSummary-class
names<-,ENCODESummary,character-method	ENCODESummary-class
names<-,GenomicOverlaps,character-method	names-set-GenomicOverlaps-character-method
pairwise_overlap	pairwise_overlap
peaks	ENCODEBindingConsensus-class
peaks,ENCODEBindingConsensus,ENCODEBindingConsensus-method	ENCODEBindingConsensus-class
peaks,ENCODEBindingConsensus-method	ENCODEBindingConsensus-class
queryConsensusPeaks	queryConsensusPeaks
queryEncode	queryEncode
queryEncodeGeneric	queryEncodeGeneric
queryExpressionGeneric	queryExpressionGeneric
queryGeneExpression	queryGeneExpression
queryTranscriptExpression	queryTranscriptExpression
raw_data	ENCODEExpressionSummary-class
raw_data,ENCODEBindingConsensus,ENCODEBindingConsensus-method	ENCODEExpressionSummary-class
raw_data,ENCODEExpressionSummary-method	ENCODEExpressionSummary-class
searchEncode	searchEncode
searchToquery	searchToquery
shinyEncode	shinyEncode
show,ENCODEBindingConsensus-method	ENCODEBindingConsensus-class
show,ENCODEExpressionSummary-method	ENCODEExpressionSummary-class
show,ENCODESummary-method	ENCODESummary-class
split_by_metadata	split_by_metadata
union_indices	union_indices
union_regions	union_regions
