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To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("XtraSNPlocs.Hsapiens.dbSNP144.GRCh37")
In most cases, you don't need to download the package archive at all.
XtraSNPlocs.Hsapiens.dbSNP144.GRCh37
Extra SNP locations for Homo sapiens (dbSNP Build 144)
Bioconductor version: 3.1
Extra SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 144. The source data files used for this package were created by NCBI on May 29-30, 2015, and contain SNPs mapped to reference genome GRCh37.p13 (a patched version of GRCh37 that doesn't alter chromosomes 1-22, X, Y, MT). While the SNPlocs.Hsapiens.dbSNP144.GRCh37 package contains only molecular variations of class "snp", this package contains molecular variations of other classes (in-del, heterozygous, microsatellite, named-locus, no-variation, mixed, and multinucleotide-polymorphism).
Author: Herve Pages
Maintainer: H. Pages <hpages at fhcrc.org>
Citation (from within R,
enter citation("XtraSNPlocs.Hsapiens.dbSNP144.GRCh37")):
Installation
To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("XtraSNPlocs.Hsapiens.dbSNP144.GRCh37")
Documentation
| Reference Manual |
Details
| biocViews | AnnotationData, Genetics, Homo_sapiens, XtraSNPlocs |
| Version | 0.99.12 |
| License | Artistic-2.0 |
| Depends | R (>= 2.10), BSgenome |
| Imports | methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome |
| LinkingTo | |
| Suggests | Biostrings, BSgenome.Hsapiens.UCSC.hg19, SNPlocs.Hsapiens.dbSNP144.GRCh37 |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | XtraSNPlocs.Hsapiens.dbSNP144.GRCh37_0.99.12.tar.gz |
| Windows Binary | |
| Mac OS X 10.6 (Snow Leopard) | |
| Mac OS X 10.9 (Mavericks) | |
| Package Short Url | http://bioconductor.org/packages/XtraSNPlocs.Hsapiens.dbSNP144.GRCh37/ |
| Package Downloads Report | Download Stats |
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