To install this package, start R and enter:

## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("BSgenome.Tguttata.UCSC.taeGut1.masked")

In most cases, you don't need to download the package archive at all.

BSgenome.Tguttata.UCSC.taeGut1.masked

Full masked genome sequences for Taeniopygia guttata (UCSC version taeGut1)

Bioconductor version: 3.1

Full genome sequences for Taeniopygia guttata (Zebra finch) as provided by UCSC (taeGut1, Jul. 2008) and stored in Biostrings objects. The sequences are the same as in BSgenome.Tguttata.UCSC.taeGut1, except that each of them has the 2 following masks on top: (1) the mask of assembly gaps (AGAPS mask), and (2) the mask of intra-contig ambiguities (AMB mask). Both masks are "active" by default.

Author: The Bioconductor Dev Team

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("BSgenome.Tguttata.UCSC.taeGut1.masked")):

Installation

To install this package, start R and enter:

## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("BSgenome.Tguttata.UCSC.taeGut1.masked")

Documentation


PDF		Reference Manual

Details

biocViews	AnnotationData, BSgenome, Genetics, Taeniopygia_guttata
Version	1.3.99
License	Artistic-2.0
Depends	BSgenome(>= 1.31.11), BSgenome.Tguttata.UCSC.taeGut1
Imports	BSgenome, BSgenome.Tguttata.UCSC.taeGut1
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Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	BSgenome.Tguttata.UCSC.taeGut1.masked_1.3.99.tar.gz
Windows Binary
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Package Short Url	http://bioconductor.org/packages/BSgenome.Tguttata.UCSC.taeGut1.masked/
Package Downloads Report	Download Stats

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