- Home
- Bioconductor 3.1
- Software Packages
- sigsquared
To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("sigsquared")
In most cases, you don't need to download the package archive at all.
sigsquared
Gene signature generation for functionally validated signaling pathways
Bioconductor version: 3.1
By leveraging statistical properties (log-rank test for survival) of patient cohorts defined by binary thresholds, poor-prognosis patients are identified by the sigsquared package via optimization over a cost function reducing type I and II error.
Author: UnJin Lee
Maintainer: UnJin Lee <unjin at uchicago.edu>
Citation (from within R,
enter citation("sigsquared")):
Installation
To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("sigsquared")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("sigsquared")
| R Script | SigSquared | |
| Reference Manual |
Details
| biocViews | Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (< 6 months) |
| License | GPL version 3 |
| Depends | R (>= 3.2.0), methods |
| Imports | Biobase, survival |
| LinkingTo | |
| Suggests | RUnit, BiocGenerics |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | sigsquared_1.0.0.tar.gz |
| Windows Binary | sigsquared_1.0.0.zip |
| Mac OS X 10.6 (Snow Leopard) | sigsquared_1.0.0.tgz |
| Mac OS X 10.9 (Mavericks) | sigsquared_1.0.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/sigsquared/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/sigsquared/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
