To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("rGREAT")
In most cases, you don't need to download the package archive at all.
rGREAT
Client for GREAT Analysis
Bioconductor version: 3.1
This package makes GREAT (Genomic Regions Enrichment of Annotations Tool) analysis automatic by constructing a HTTP POST request according to user's input and automatically retrieving results from GREAT web server.
Author: Zuguang Gu
Maintainer: Zuguang Gu <z.gu at dkfz.de>
Citation (from within R,
enter citation("rGREAT")):
Installation
To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("rGREAT")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("rGREAT")
| HTML | R Script | Analyze with GREAT |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | GO, GeneSetEnrichment, GenomeAnnotation, Pathways, Sequencing, Software, WholeGenome |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (< 6 months) |
| License | GPL (>= 2) |
| Depends | R (>= 2.10.0), GenomicRanges, IRanges |
| Imports | methods, rjson, GetoptLong (>= 0.0.9), RCurl |
| LinkingTo | |
| Suggests | testthat (>= 0.3), knitr, circlize |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/jokergoo/rGREAT |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | rGREAT_1.0.0.tar.gz |
| Windows Binary | rGREAT_1.0.0.zip |
| Mac OS X 10.6 (Snow Leopard) | rGREAT_1.0.0.tgz |
| Mac OS X 10.9 (Mavericks) | rGREAT_1.0.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/rGREAT/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/rGREAT/ |
| Package Downloads Report | Download Stats |
Documentation »
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