To install this package, start R and enter:

## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("muscle")

In most cases, you don't need to download the package archive at all.

muscle

Multiple Sequence Alignment with MUSCLE

Bioconductor version: 3.1

MUSCLE performs multiple sequence alignments of nucleotide or amino acid sequences.

Author: Algorithm by Robert C. Edgar. R port by Alex T. Kalinka.

Maintainer: Alex T. Kalinka <alex.t.kalinka at gmail.com>

Citation (from within R, enter citation("muscle")):

To install this package, start R and enter:

## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("muscle")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("muscle")

biocViews	Alignment, DataImport, Genetics, MultipleSequenceAlignment, SequenceMatching, Sequencing, Software
Version	3.10.0
In Bioconductor since	BioC 3.1 (R-3.2) (< 6 months)
License	Unlimited
Depends	Biostrings
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL	http://www.drive5.com/muscle/
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	muscle_3.10.0.tar.gz
Windows Binary	muscle_3.10.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	muscle_3.10.0.tgz
Mac OS X 10.9 (Mavericks)	muscle_3.10.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/muscle/tree/release-3.1
Package Short Url	http://bioconductor.org/packages/muscle/
Package Downloads Report	Download Stats

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