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To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("matchBox")
In most cases, you don't need to download the package archive at all.
matchBox
Utilities to compute, compare, and plot the agreement between ordered vectors of features (ie. distinct genomic experiments). The package includes Correspondence-At-the-TOP (CAT) analysis.
Bioconductor version: 3.1
The matchBox package enables comparing ranked vectors of features, merging multiple datasets, removing redundant features, using CAT-plots and Venn diagrams, and computing statistical significance.
Author: Luigi Marchionni <marchion at jhu.edu>, Anuj Gupta <agupta52 at jhu.edu>
Maintainer: Luigi Marchionni <marchion at jhu.edu>, Anuj Gupta <agupta52 at jhu.edu>
Citation (from within R,
enter citation("matchBox")):
Installation
To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("matchBox")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("matchBox")
| R Script | Working with the matchBox package | |
| Reference Manual |
Details
| biocViews | Annotation, Microarray, MultipleComparison, Software, Visualization |
| Version | 1.10.0 |
| In Bioconductor since | BioC 2.11 (R-2.15) (3 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.8.0) |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | matchBox_1.10.0.tar.gz |
| Windows Binary | matchBox_1.10.0.zip |
| Mac OS X 10.6 (Snow Leopard) | matchBox_1.10.0.tgz |
| Mac OS X 10.9 (Mavericks) | matchBox_1.10.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/matchBox/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/matchBox/ |
| Package Downloads Report | Download Stats |
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