- Home
- Bioconductor 3.1
- Software Packages
- biocGraph
To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("biocGraph")
In most cases, you don't need to download the package archive at all.
biocGraph
Graph examples and use cases in Bioinformatics
Bioconductor version: 3.1
This package provides examples and code that make use of the different graph related packages produced by Bioconductor.
Author: Li Long <li.long at isb-sib.ch>, Robert Gentleman <rgentlem at fhcrc.org>, Seth Falcon <sethf at fhcrc.org> Florian Hahne <fhahne at fhcrc.org>
Maintainer: Florian Hahne <florian.hahne at novartis.com>
Citation (from within R,
enter citation("biocGraph")):
Installation
To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("biocGraph")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("biocGraph")
| R Script | Examples of plotting graphs Using Rgraphviz | |
| R Script | HOWTO layout pathways | |
| Reference Manual |
Details
| biocViews | GraphAndNetwork, Software, Visualization |
| Version | 1.30.0 |
| In Bioconductor since | BioC 2.1 (R-2.6) (8 years) |
| License | Artistic-2.0 |
| Depends | Rgraphviz, graph |
| Imports | Rgraphviz, geneplotter, graph, BiocGenerics, methods |
| LinkingTo | |
| Suggests | fibroEset, geneplotter, hgu95av2.db |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | EnrichmentBrowser |
| Suggests Me | BiocCaseStudies |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | biocGraph_1.30.0.tar.gz |
| Windows Binary | biocGraph_1.30.0.zip |
| Mac OS X 10.6 (Snow Leopard) | biocGraph_1.30.0.tgz |
| Mac OS X 10.9 (Mavericks) | biocGraph_1.30.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/biocGraph/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/biocGraph/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
